Get

In Your Inbox

Dogster is reader-supported. When you buy via links on our site, we may earn an affiliate commission at no cost to you. Learn more.

Merle Dogs: Breeding Problems With Colors

Share

Blue merle shetland sheepdog sheltie laying on wood floor

The dog world is full of astounding color variations and patterns, and Merle is one of the most prominent unusual coat types. In some dog breeds merle is called “dapple”, but they equate to the same thing. Blue merle is the most well-known type of merle coat, with dappled gray spots against a lighter gray coat. Merle is the contrast of a darker pigment against the same pigment in a lighter shade, not a specific color combo.

You can also see red merle coats that exhibit reddish-brown splotches against a lighter tan. The exact shade of the spots and the background color shift a bit with coat color genetics, as do the size, spacing, and shape of the spots.

Sometimes, merle dogs even have unusually light eyes or heterochromatic odd-colored eyes. The nose and paw pads can also be lighter. Unfortunately, the Merle gene is linked to several severe health conditions that can affect the dog’s quality of life and makes breeding merle dogs an ethical quandary.

For an overview, check out a list of the most common health issues associated with the merle gene below.

divider dog paws 3 oct 2024

Common Health Problems in Merle Dogs

  • Deafness in one or both ears
  • Microphthalmia leading to small, deformed, and often non-functional eyes
  • Microcoria, meaning the irises are missing the muscles that cause the pupil to dilate
  • Other eye deformations, like missing the reflective layer at the back of the eye or underdeveloped corneas
  • Sensitivity to direct sunlight and sunburn

Those are significant health problems, but how exactly does the merle gene cause them? Are you supposed to breed merle dogs with other merles or not? If you’ll humor us, we’ll wade into all that info and more about the merle gene below.

Merle Aussiedoodle
Image Credit: IK Photography, Shutterstock

What Breeds Can Have Merle Coats?

Due to selective breeding by humans and the allowance (or even preference) for merle coats in some beed standards, some breeds are more likely to carry and pass on the merle gene than others. As with other genes, the merle gene can be passed to mixed dogs, making it essential to consider whether their purebred parents came from breeds that carry the merle gene. It’s also good for new dog owners to have a better idea of which dogs can suffer from partial deafness or eye problems due to a merle coat. Check out the breeds below for quick reference.

Merle Dog Breeds:

The Merle Coat & Genetics: How DNA Becomes Color

The merle trait occurs at the PMEL17 (Silver) gene. This gene normally helps produce eumelanin, which is responsible for producing pigment in the skin, eyes, and inner ears. A mutation called SINE insertion tips over this careful genetic sequence, causing a cascade of effects, including the unique merle coloration and the other health problems seen in merle dogs.

At its most basic, the merle gene suppresses or disrupts the production of melanin or color-carrying pigment in certain parts of the skin, leading to the signature merle gray-on-black spots. How a merle coat presents depends on whether a dog is a single merle or double merle. The difference? Single-merle dogs have one dominant merle gene from one parent and a recessive non-merle gene from the other, while double-merle pups have a dominant merle gene from both parents (MM).

Single-merle dogs have a wider range of color because the merle gene doesn’t uniformly suppress the skin pigment. For example, a tan and brown single merle dog can display up to four or more distinct shades, creating vivid contrast. These dogs are less at risk of the most severe side effects caused by the merle gene. Single-merle dogs are generally more desirable because they have a pleasing coat pattern with minimal detrimental side effects.

The merle gene’s effects on double-merle dogs are much more obvious. The base skin color becomes white, and the gray spots are less obvious, with some dogs appearing all-white with very few small spots across the body. Double-merle dogs often have blue or heterochromatic eyes, and sadly, they can be small or deformed, a condition called microphthalmia. The risk of deafness is high, too. The pigment genes suppressed in these dogs are necessary for the cochlear to function properly, so when they are suppressed, parts of the cochlear (inner ear) degenerate, leading to deafness. In one study, 3.5% of single-merle dogs and 25% of double-merles had deafness in one or both ears.

a red merle australian shepherd with blue eyes
Image Credit: Heather Skau, Shutterstock

Should You Breed Two Merle Dogs Together?

No, it’s considered ethically irresponsible to breed two merle dogs because of the higher risk of health problems. When two single merle dogs are bred together, statistically 1 in 4 offspring will be double merle. In addition to deafness, they can also have heart problems and other abnormalities. Even so, many shady dog breeders purposely breed merle dogs together to produce merle puppies that command high prices.

With a 1 in 4 chance of double merle dogs being entirely deaf, as well as the other health problems that can occur, there’s a tragically high risk of undesirable puppies being abandoned and put to sleep.

Genetic screening can help identify which parents should be bred together, which is not as simple as it may seem due to the presence of “cryptic merles” that don’t look like merle dogs, as well as other genes that influence the merle trait.

For example, the harlequin gene influences the merle gene and causes a desirable harlequin merle appearance in Great Danes, however, dogs with two copies of this modifier do not survive. In addition, genes for low piebald spotting may have a protective effect on double-merle dogs.

Since the gene interactions are quite complicated, the breeding of merle dogs is best left to experienced breeders with a strong understanding of coat color genetics.

Is the Merle Gene Related to Albinism? Merle vs. Albino Coats Explained

Double-merle coats are sometimes confused for albino coats because they have a distinct white base and a noticeable lack of pigmentation. This is especially common if their spots are very sparse and muted. It’s easy to see the confusion if you know little about merle or albino coats, but they’re completely separate phenomena!

Merle coats result from a mutated gene that produces less melanin in some parts of a dog’s skin and fur, while albino coats are caused by a different genetic defect that causes the skin and fur to produce no melanin at all.

The difference is subtle but obvious once you see it. Albino dogs have snowy all-white coats with no spots and have blue or reddish-pink “albino eyes.” Like merle dogs, albinos have sensitive skin that burns easily with prolonged sunlight exposure.

albino French Bulldog sitting on the grass
Image Credit: everydoghasastory, Shutterstock

divider dog paws 3 oct 2024

Conclusion

The merle gene is responsible for some of the most stunning coat colors in the dog world but also some nasty side effects like deafness and blindness. While impossible to eliminate, these risks can be somewhat managed by encouraging people to breed single-merle dogs that generally lead healthier, happier lives than many double-merle dogs that develop health complications.


Featured Image Credit: arturs.stiebrins, Shutterstock

Want content like this delivered to you?

Sign Up For Our Newsletter

News, insights, expert advice, and everything dog

* By submitting, you agree to our Terms & Conditions and Privacy & Cookies Policy.




How useful was this post?

Click on a star to rate (you can leave written feedback after clicking submit)

Help us improve Dogster for pet parents!

Your feedback really matters.

What did you like about this post? Also how can we improve it?

Join the conversation

Leave a Reply

You’re very welcome to leave a comment or question. Please know that all comments must meet our community guidelines, and your email address will NOT be published. Let’s have a positive and constructive conversation.


Talk With A Vet Online

Peace of mind,
anywhere, anytime

Affordable vet advice

Ask Dr. Paola- Help! My Dog Gets Reoccurring UTIs (March 9, 2026)

Welcome to our “Ask Dr. Paola” series, where every Monday we bring expert advice straight from Dr. Paola Cuevas (MVZ) to help our...

DIY Repellents for the Dog Who Thinks Everywhere Is His Toilet

Dog urine and everything nice have a complicated relationship. One thrives, the other suffers, and if you’re reading this, you already know which...

Dogster’s Weekly Photo Contest Winners: I Dig, Therefore I Am (March 5, 2026)

Every week our team gets the privilege of sorting through our readers photos to choose what dogs will win this weeks contest! See...

Ways to Stop Dog Boredom Before It Destroys Your House

Your dog is staring at you. They’ve paced between the door and the couch. They’ve sighed dramatically from their bed. The message is...

More related

20 Dogs That Are Good with Cats: Pictures & Facts

Dogs and cats are stereotypically enemies. However, several dog breeds get along with cats. Often, they were bred to be companions and don’t...

8 Great Off-Leash Dog Parks in Sarasota, FL You Can Visit Today

Florida is famous for its perfect sunny weather, beautiful beaches, and fantastic dog parks. The weather makes the state ideal for outings and...

11 Best Dog Foods for Beagles in 2026 – Reviews & Top Picks

Beagles are generally a healthy dog breed, but they can be susceptible to specific health conditions. Most Beagles tend to become overweight and...

The World’s Toughest Working Dogs Who Weren’t Bred to Be Pets

There are dogs that sleep on couches and bark at squirrels. Then there are dogs that spend their nights alone in the mountains,...

Keep reading

Can Dogs Eat Dried Mangoes? Vet-Verified Nutritional Info & Risks

A mango can be a beautiful, delicious, and healthy part of a human’s diet. When ripe, this juicy fruit is easy to eat and full of important nutrients that all bodies need for good health and a high quality of...

Can Dogs Eat_Dried Mangoes

Supreme Source Dog Food Review 2026: Pros, Cons, Recalls & FAQ

Review Summary There are many dog food brands on the market today, and each of them claims to be the best for your pup. However, not all of them are created equal. In this article, we will discuss the factors...

Dogster_Supreme Source Dog Food Review

Can Dogs Eat Turnips? Vet-Reviewed Facts & Safety Guide

Turnips are hardy root vegetables similar to parsnips and potatoes. Dogs can eat turnips in moderation; they can provide some health benefits and dietary fiber, and they are fine for your dog as long as it doesn’t suffer from thyroid...

Can Dogs Eat_Turnips

5 Best Fresh Dog Food Delivery Services in Australia: 2026 Reviews & Top Picks

More and more Australians are looking for a great way to feed their pooches without leaving the house. There are a number of fantastic dog food delivery services available in Australia, each with its own unique benefits. These services allow...

dog ordering food for delivery

Can Dogs Eat Hibiscus? Vet Approved Facts & FAQ

When growing plants in our garden, many dog lovers aren’t aware of the possible toxicity our beautiful plants have which can harm our pets. Hibiscus is a type of perennial flowering plant that adds beauty to many gardens and is...

Can Dogs Eat Hibiscus

Can Dogs Eat Dill? Vet-Verified Nutrition Facts & Preparation Ideas

Dill (Anethum graveolena) is a member of the parsley family, Apiaceae, and is safe to feed to dogs, in moderation. There is no evidence that indicates that dill causes problems in dogs, but it is always best to feed it...

Dogster-Can-Dogs-Eat-Dill

Can Dogs Eat Croissants? Vet-Verified Nutrition Facts & Alternatives

Although croissants don’t contain ingredients that are toxic to dogs, it’s still not recommended for dogs to eat them. So, you don’t have to worry too much if your dog sneaks a bite of a croissant, but this pastry shouldn’t...

Can Dogs Eat_croissants

Can Dogs Have Persimmons? Vet-Verified Nutrition Facts & FAQ

Persimmons make a versatile addition to the kitchen and infuse foods with a delightful sweetness and unique health benefits that parents, kids, and even our pets can enjoy. Dogs can eat persimmons as an occasional treat without issue if you...

Dogster-Can-Dogs-Have-Persimmons

Love Dogs? So Do We! Join the Dogster Community

Stay informed with expert pet care insights delivered straight to your inbox! Discover professional guidance on animal behavior, feeding tips, trusted product picks, and much more.




Sign up for the Dogster Email Newsletter