Get

In Your Inbox

Dogster is reader-supported. When you buy via links on our site, we may earn an affiliate commission at no cost to you. Learn more.

Merle Dogs: Breeding Problems With Colors

Blue merle shetland sheepdog sheltie laying on wood floor

The dog world is full of astounding color variations and patterns, and Merle is one of the most prominent unusual coat types. In some dog breeds merle is called “dapple”, but they equate to the same thing. Blue merle is the most well-known type of merle coat, with dappled gray spots against a lighter gray coat. Merle is the contrast of a darker pigment against the same pigment in a lighter shade, not a specific color combo.

You can also see red merle coats that exhibit reddish-brown splotches against a lighter tan. The exact shade of the spots and the background color shift a bit with coat color genetics, as do the size, spacing, and shape of the spots.

Sometimes, merle dogs even have unusually light eyes or heterochromatic odd-colored eyes. The nose and paw pads can also be lighter. Unfortunately, the Merle gene is linked to several severe health conditions that can affect the dog’s quality of life and makes breeding merle dogs an ethical quandary.

For an overview, check out a list of the most common health issues associated with the merle gene below.

divider dog paws 3 oct 2024

Common Health Problems in Merle Dogs

  • Deafness in one or both ears
  • Microphthalmia leading to small, deformed, and often non-functional eyes
  • Microcoria, meaning the irises are missing the muscles that cause the pupil to dilate
  • Other eye deformations, like missing the reflective layer at the back of the eye or underdeveloped corneas
  • Sensitivity to direct sunlight and sunburn

Those are significant health problems, but how exactly does the merle gene cause them? Are you supposed to breed merle dogs with other merles or not? If you’ll humor us, we’ll wade into all that info and more about the merle gene below.

Merle Aussiedoodle
Image Credit: IK Photography, Shutterstock

What Breeds Can Have Merle Coats?

Due to selective breeding by humans and the allowance (or even preference) for merle coats in some beed standards, some breeds are more likely to carry and pass on the merle gene than others. As with other genes, the merle gene can be passed to mixed dogs, making it essential to consider whether their purebred parents came from breeds that carry the merle gene. It’s also good for new dog owners to have a better idea of which dogs can suffer from partial deafness or eye problems due to a merle coat. Check out the breeds below for quick reference.

Merle Dog Breeds:

The Merle Coat & Genetics: How DNA Becomes Color

The merle trait occurs at the PMEL17 (Silver) gene. This gene normally helps produce eumelanin, which is responsible for producing pigment in the skin, eyes, and inner ears. A mutation called SINE insertion tips over this careful genetic sequence, causing a cascade of effects, including the unique merle coloration and the other health problems seen in merle dogs.

At its most basic, the merle gene suppresses or disrupts the production of melanin or color-carrying pigment in certain parts of the skin, leading to the signature merle gray-on-black spots. How a merle coat presents depends on whether a dog is a single merle or double merle. The difference? Single-merle dogs have one dominant merle gene from one parent and a recessive non-merle gene from the other, while double-merle pups have a dominant merle gene from both parents (MM).

Single-merle dogs have a wider range of color because the merle gene doesn’t uniformly suppress the skin pigment. For example, a tan and brown single merle dog can display up to four or more distinct shades, creating vivid contrast. These dogs are less at risk of the most severe side effects caused by the merle gene. Single-merle dogs are generally more desirable because they have a pleasing coat pattern with minimal detrimental side effects.

The merle gene’s effects on double-merle dogs are much more obvious. The base skin color becomes white, and the gray spots are less obvious, with some dogs appearing all-white with very few small spots across the body. Double-merle dogs often have blue or heterochromatic eyes, and sadly, they can be small or deformed, a condition called microphthalmia. The risk of deafness is high, too. The pigment genes suppressed in these dogs are necessary for the cochlear to function properly, so when they are suppressed, parts of the cochlear (inner ear) degenerate, leading to deafness. In one study, 3.5% of single-merle dogs and 25% of double-merles had deafness in one or both ears.

a red merle australian shepherd with blue eyes
Image Credit: Heather Skau, Shutterstock

Should You Breed Two Merle Dogs Together?

No, it’s considered ethically irresponsible to breed two merle dogs because of the higher risk of health problems. When two single merle dogs are bred together, statistically 1 in 4 offspring will be double merle. In addition to deafness, they can also have heart problems and other abnormalities. Even so, many shady dog breeders purposely breed merle dogs together to produce merle puppies that command high prices.

With a 1 in 4 chance of double merle dogs being entirely deaf, as well as the other health problems that can occur, there’s a tragically high risk of undesirable puppies being abandoned and put to sleep.

Genetic screening can help identify which parents should be bred together, which is not as simple as it may seem due to the presence of “cryptic merles” that don’t look like merle dogs, as well as other genes that influence the merle trait.

For example, the harlequin gene influences the merle gene and causes a desirable harlequin merle appearance in Great Danes, however, dogs with two copies of this modifier do not survive. In addition, genes for low piebald spotting may have a protective effect on double-merle dogs.

Since the gene interactions are quite complicated, the breeding of merle dogs is best left to experienced breeders with a strong understanding of coat color genetics.

Is the Merle Gene Related to Albinism? Merle vs. Albino Coats Explained

Double-merle coats are sometimes confused for albino coats because they have a distinct white base and a noticeable lack of pigmentation. This is especially common if their spots are very sparse and muted. It’s easy to see the confusion if you know little about merle or albino coats, but they’re completely separate phenomena!

Merle coats result from a mutated gene that produces less melanin in some parts of a dog’s skin and fur, while albino coats are caused by a different genetic defect that causes the skin and fur to produce no melanin at all.

The difference is subtle but obvious once you see it. Albino dogs have snowy all-white coats with no spots and have blue or reddish-pink “albino eyes.” Like merle dogs, albinos have sensitive skin that burns easily with prolonged sunlight exposure.

albino French Bulldog sitting on the grass
Image Credit: everydoghasastory, Shutterstock

divider dog paws 3 oct 2024

Conclusion

The merle gene is responsible for some of the most stunning coat colors in the dog world but also some nasty side effects like deafness and blindness. While impossible to eliminate, these risks can be somewhat managed by encouraging people to breed single-merle dogs that generally lead healthier, happier lives than many double-merle dogs that develop health complications.


Featured Image Credit: arturs.stiebrins, Shutterstock

Want content like this delivered to you?

Sign Up For Our Newsletter

News, insights, expert advice, and everything dog

* By submitting, you agree to our Terms & Conditions and Privacy & Cookies Policy.

How useful was this post?

Click on a star to rate (you can leave written feedback after clicking submit)

Help us improve Dogster for pet parents!

Your feedback really matters.

What did you like about this post? Also how can we improve it?

Join the conversation

Leave a Reply

You’re very welcome to leave a comment or question. Please know that all comments must meet our community guidelines, and your email address will NOT be published. Let’s have a positive and constructive conversation.

Talk With A Vet Online

Peace of mind,
anywhere, anytime

Affordable vet advice

Cretan Hound Dog Breed: Info, Pictures, Care & More

The Cretan Hound is a descendant of scent and sighthounds, making them one of the most ancient dog breeds in the world. These...

Intervertebral Disc Disease in Dogs: Signs, Causes & Diagnosis (Vet Answer)

Your dog’s back is painful, or they suddenly have trouble getting around. You know that Dachshunds are predisposed to back problems. Is that...

How Much Does a Sheepadoodle Cost? (2025 Price Guide)

Sheepadoodles are wonderful dogs that love spending time with their families. They are especially fond of children and are quite gentle with them....

Do Body Wraps Truly Help Dogs With Anxiety? (Vet Answer)

Anxiety in dogs can be triggered in different situational or behavioral contexts. You may not always be with your beloved four-legged friend when...

More related

Can Pancreatitis Cause Bad Breath in Dogs? Health & Care Facts (Vet Answer)

Bad breath in dogs is something that pet owners fight constantly. We all know that tartar accumulation and poor oral hygiene are common...

Do Airedale Terriers Shed? Vet-Approved Facts & Care Tips

Airedale Terriers are the largest of all Terrier breeds, with curly coats and strong frames. They have classic curly coats similar to those...

Spinone Italiano Dog Breed: Info, Pictures, Facts, & Traits

The Spinone Italiano is a loving and loyal companion pet but was bred for hunting and, as such, has high energy demands. They...

American Bandogge Mastiff Dog Breed: Info, Pictures & Care

American Bandogge Mastiffs are big, confident dogs that are extremely loyal and protective of their families. Despite their often intimidating appearance, they’re excellent...

Keep reading

10 Best Dog Foods for Maltipoo Puppies in 2025 – Reviews & Top Picks 

You’ve just brought home an adorable Maltipoo puppy from the breeder, and you’re excited to watch this little ball of fluff grow into an adult. Puppies of all breeds need well-balanced nutrition to grow up strong and healthy, but not...

Maltipoo puppy eats from a metal bowl

Can Dogs Eat Jolly Ranchers? Vet Approved Facts & FAQ

Do you have a candy jar on the coffee table or the counter? Does your dog enjoy stealing food when you’re not looking? You are not alone! With dogs, this is a common situation. You might be curious if Jolly...

Can Dogs Eat Jolly Ranchers

Can Dogs Eat Cheese? Vet-Reviewed Nutrition Facts & Safety Guide

As a dog owner, you may have given a piece of cheese to your dog as a treat, or they may have snagged a piece while you were making lunch. If you’re wondering if this is okay or are considering...

Can Dogs Eat Cheese

Can Dogs Eat Gravy? Vet-Reviewed Facts & Alternatives

Gravy can seem like a treat that many dogs can enjoy. Gravies are often meat-based, and many dogs lap them up enthusiastically. However, it’s generally not recommended for dogs to eat gravy because it can contain harmful ingredients, and it...

Can Dogs Eat Gravy

Is It Cheaper to Make Your Own Dog Food? Vet-Approved Facts & Advice

As more and more pet parents realize the value of good nutrition for overall health, the amount spent on commercial dog food is soaring. In the U.S., owners spent $422 on pet food in 2020. The pet industry expenditure has...

man preparing homemade dog food

How to Store Homemade Dog Food: 6 Vet-Reviewed Tips

Making homemade dog food can be a great option for your canine; after all, you can’t get much fresher than homemade. However, storing the food can be a bit more complicated, as it lacks the artificial preservatives found in commercial...

Homemade brown rice dog food on a feeding bowl

Pure Balance vs Blue Buffalo Dog Food: Our 2025 Comparison

The dog food aisle can be a bit overwhelming when you’re faced with brand after brand claiming to offer the best nutrition. You want the best for your pet, so where do you start when choosing the right dog food?...

Dogster_Dog Food Pure Balance VS Blue Buffalo

Victor Dog Food vs Blue Buffalo 2025 Comparison: Pros & Cons

When it comes to choosing food for your dog, it can be confusing and difficult to choose between brands. We all want the best for our dogs, but it’s not uncommon to unintentionally select a food that isn’t appropriate for...

Dogster_Dog Food Victor VS Blue Buffalo